You want to use the option "Preventing Archive Deletes from being Replicated to a Target System" following SLT Application Operation Guide.
In the SAP LT Server system in table IUUC_REPL_CONFIG, set the field IGNO_ARCHIVE_DEL to x for the relevant mass transfer ID (MT_ID).
Note that the field IGNO_ARCHIVE_DEL can have the content ‘x’, ‘-’, or ‘ ’.
But you cannot change it in SE16.
DMIS 2011 SP5 or higer
IUUC_REPL_CONFIG, IGNO_ARCHIVE_DEL, SE11, SE16, Delivery and Maintenance, LTRC, LTRS, SAPSR3 , KBA , HAN-DP-LTR , SAP Landscape Transformation Replication Server , How To
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