According to note 532725 when you create a downpayment with reference to a purchase order and later you post a goods receipt (G/R) or invoice receipt (I/R) to the same purchase order, standard logic reduces the purchase order independently for the downpayment, G/R or I/R. The decision is left to the user, regarding whether G/R or I/R should clear, because at any time it is possible to clear the downpayment with G/R or I/R through a FI document.
Also refer to note 1001216, when the purchase order is fully delivered, invoiced and related downpayment is cleared, the modification has no effect. For Earmarked Fund document, higher amount from downpayment or goods/invoice receipt reduces the commitment.
Automatic Downpayment clearing in PSM is available from Release SAP_APPL / EA-PS 6.00.
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